I am a Freshman in a high school I want to transfer out of, I was late and absent to physical education multiple times causing my to get a 75. Will this affect my chances negatively to getting into a top university like Cornell, Princeton or NYU?
Having a 75 in any class definitely isn't the best and may affect your chances a little, but it won't TOTALLY ruin you. But the fact that you went from a 75 to a 95 shows improvement and that you probably actually cared about the class or saw the error of your ways, so that's a good thing.
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